Student Publications

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Previous Student Publications


Laura Cesa (Mapp Lab)

  1. Cesa LC, Mapp AK, Gestwicki JE (2015) Direct and propagated effects of small molecules on protein-protein interaction networks. Front. Bioeng. Biotechnol.  3:119.
  2. Cesa LC*, Patury S*, Komiyama T, Ahmad A, Zuiderweg, ER, Gestwicki JE (2013). Inhibitors of protein-protein interactions identified by high-throughput screening of multi-protein complexes. ACS Chem Biol. 8(9): 1988-1997. [PDF]
  3. Majmudar, C. Y.; Højfeldt, J. W.; Arevang, C. J.; Pomerantz, W. C.; Gagnon, J. K.; Schultz, P. J.; Cesa, L. C.; Doss, C. H.; Rowe, S. P.; Vásquez, V.; Tamayo-Castillo, G.; Cierpicki, T.; Brooks, C. L. 3rd; Sherman, D. H.; Mapp, A. K. (2012). Sekikaic acid and lobaric acid target a dynamic interface of the coactivator CBP/p300. Angew. Chem. Int. Ed. Engl. 51(45): 11258-11262. [PDF]
  4. Cesa LC, Higgins CA, Sando SR, Kuo DW, Levandoski MM (2012). Specificity Determinants of Allosteric Modulation in the Neuronal Nicotinic Acetylcholine Receptor: A Fine Line between Inhibition and Potentiation. Molecular Pharmacology 81(2): 239-249. [PDF]

*authors contributed equally

Osvaldo Cruz (Tesmer Lab)

  1. Bifunctional Ligands Allow Deliberate Extrinsic Reprogramming of the Glucocorticoid Receptor. Højfeldt JW, Cruz-Rodríguez O, Imaeda Y, Van Dyke AR, Carolan JP, Mapp AK, Iñiguez-Lluhí JA. Mol Endocrinol. 2014 Jan 1:me20131343. [Epub ahead of print]
  2. The in vivo role of androgen receptor SUMOylation as revealed by androgen insensitivity syndrome and prostate cancer mutations targeting the proline/glycine residues of synergy control motifs.
    Mukherjee S, Cruz-Rodríguez O, Bolton E, Iñiguez-Lluhí JA.
    J Biol Chem. 2012 Sep 7;287(37):31195-206. doi: 10.1074/jbc.M112.395210. Epub 2012 Jul 24.
  3. Small ubiquitin-like modifier (SUMO) modification mediates function of the inhibitory domains of developmental regulators FOXC1 and FOXC2. Danciu TE, Chupreta S, Cruz O, Fox JE, Whitman M, Iñiguez-Lluhí JA. J Biol Chem. 2012 May 25;287(22):18318-29. doi: 10.1074/jbc.M112.339424. Epub 2012 Apr 5.

Corey Custer (Walter Lab)

  1. Bartke, E.M., Cameron, E.L., Christie-David, A.S., Custer, T.C., Denies, M.S., Farhat, M.D., Dhakal S., Ghosh, S., Heinicke, L.A., Hoff, J.D., Hou, Q., Kahlscheuer, M.L., Karslake, J., Krieger, A.G., Li, J., Lund, P.E., Vo, N.N., Park, J., Pitchiaya, S., Smith, D.J., Suddala, K.C., Wang, J., Widom, J.R., and Walter, N.G., SMART Timing:  Principles of Single Molecule Techniques Course at the University of Michigan 2014.  Biopolymers, in press. [PMCID not yet available].
  2. Pitchiaya, S., Heinicke, L.A., Custer, T.C. and Walter, N.G., Single molecule fluorescence approaches shed light on intracellular RNAs. Chem. Rev., 2014; 114:3224-3265.
  3. Pitchiaya, S., Krishnan, V., Custer, T.C. and Walter, N.G., Dissecting non-coding RNA mechanisms in Cellulo by Single-molecule High-Resolution Localization and Counting. Methods, 2013; 63:188-199.

Matthew DeMars (Sherman Lab)

  1. Zhang, K.; Shafer, B. M.; Demars II, M. D.; Stern, H. A.; Fasan, R. Controlled oxidation of remote sp3 C-H bonds in artemisinin via P450 catalysts with fine-tuned regio- and stereoselectivity. J. Am. Chem. Soc. 2012, 134, 18695. [PDF]



Stephanie Gates (Southworth Lab)

  1. Voth W, Schick M, Gates S, Li S, Vilardi F, Gostimskaya I, Southworth DR, Schwappach B, Jakob U (2014) The protein targeting factor Get3 functions as ATP-independent chaperone under oxidative stress conditions. Mol Cell 56: 116-127.

Carrie Johnson (Iniguez Lab)

  1. Johnson, A.R., Johnson, C.M., Stoll, D.R., Vitha, M.F.  Identifying orthogonal and similar reversed phase liquid chromatography stationary phases using the system selectivity cube and the hydrophobic subtraction model.  J Chromatogr. A 2012, 1249, 62-82. [Full Text]
  2. Soheili, A., Johnson, C.M., Tambar, U.K. “Synthesis of (+/-)-Amathaspiramide F: Stereochemical Switch of a [2,3]-Stevens Rearragement”, in: Strategies and Tactics in Organic Synthesis, Volume 10.  Elsevier, pp. 131–154.

Jarrett Johnson (Zhang Lab)

  1. Shauna Hill, BS; Christopher M Allan, BS; Susan Morvaridi, PhD; Ryoichi Saiki, PhD; Jarrett S. Johnson, Wei-Siang Liau, BS; Kathleen Hirano, BS; Tadashi Kawashima, BS; Ziming Ji, BS; Joseph A Loo, PhD; Jennifer N Shepherd, PhD; Catherine Freitag Clarke, PhD. (2013) A Conserved START Domain Coenzyme Q-binding Polypeptide is Required for Efficient Q Biosynthesis, Respiratory Electron Transport, and Antioxidant Function in Saccharomyces cerevisiae. Biochim. Biophys. Acta 1831 (2013) 776-791.


Adrian Landreth ()

  1. Strom KR, Impastato AC, Moy KJ, Landreth AJ, Snyder JK. Gallium(III)-Promoted Halocyclizations of 1,6-Diynes. Org. Lett. 2015. DOI: 10.1021/acs.orglett.5b00716 [PDF]

Daniel Lorenz (Garner Lab)

  1. Lockshon D, Olsen CP, Brett CL, Chertov A, Merz AJ, Lorenz DA, Van Gilst MR, Kennedy BK. (2012) Rho Signaling Participates in Membrane Fluidity Homeostasis. PLoS ONE 7(10): e45049. doi:10.1371/journal.pone.0045049
  2. Lorenz, D. A., Song, J. M., Garner, A. L., "High-Throughput Platform Assay Technology for the Discovery of pre-microRNA-Selective Small Molecule Probes." Bioconjugate Chemistry, 2014. [PDF]

Rachel Pricer (Mapp Lab)

  1. Pricer, R.E., Houghton, J.L., Green, K.D., Mayhoub, A.S., &
    Garneau-Tsodikova, S.  (2012). Biochemical and structural analysis of aminoglycoside acetyltransferase Eis from Anabaena variabilis. Mol. BioSyst., 8, 3305-3313.
  2. Houghton, J.L., Green, K.D., Pricer, R.E., Mayhoub, A.S., &
    Garneau-Tsodikova, S.  (2013). Unexpected N-acetylation of capreomycin by mycobacterial Eis enzymes. J. Antimicrob. Chemother., 68, 800-805.
  3. Lancia, J.K., Nwokoye, A., Dugan, A., Joiner, C., Pricer, R.,
    & Mapp, A.K. (2013). Sequence context and crosslinking mechanism affect the efficiency of in vivo capture of a protein-protein interaction. Biopolymers, Accepted.
  4. Rashidian, M., Song, J. M., Pricer, R. E., Distefano, M. D., "Chemoenzymatic Reversible Immobilization and Labeling of Proteins without Prior Purification." Journal of the American Chemical Society, 2012.



James Song (Garner Lab)

  1. Rashidian, M., Song, J. M., Pricer, R. E., Distefano, M. D., "Chemoenzymatic Reversible Immobilization and Labeling of Proteins without Prior Purification." Journal of the American Chemical Society, 2012. [PDF]
  2. Lorenz, D. A., Song, J. M., Garner, A. L., "High-Throughput Platform Assay Technology for the Discovery of pre-microRNA-Selective Small Molecule Probes." Bioconjugate Chemistry, 2014. [PDF]

Eric Sullivan (Fierke Lab)

  1. Kincaid, V. A., E. D. Sullivan, et al. (2011). "Structure and Catalytic Mechanism of Nicotinate (Vitamin B3) Degradative Enzyme Maleamate Amidohydrolase from Bordetella bronchiseptica RB50." Biochemistry 51(1): 545-554.

Christopher Tom (Martin Lab)

  1. Turner, D; Tom, C.T.M.B.; Renslo, A.  Simple Plate-Based, Parallel Synthesis of Disulfide Fragments using the CuAAC Click Reaction.  ACS Comb. Sci. Accepted October 2014. 

  2. Davda, D.; Azzouny, M.E.; Tom, C.T.M.B.; Hernandez, J.L.; Majmudar, J.D.; Martin B.R. Profiling targets of the irreversible palmitoylation inhibitor 2-bromopalmitate.  ACS Chem. Bio.  2013, 8, 1912.

  3. Tom, C.T.M.B.; Martin, B.R. Fat Chance! Getting a grip on a slippery modification.  ACS Chem Bio.  20138, 46.

  4. Burlingame, M.;, Tom, C.T.M.B.; Renslo, A. A one-pot synthesis of disulfide fragments for disulfide-exchange screening and structure-Activity Studies. ACS Comb. Sci., 2011, 13, 205.



Michael (Sang Joon) Won (Martin Lab)

  1. Gruenig MC, Lu D, Won SJ, Dulberger CL, Manlick AJ, Keck JL, Cox MM. Creating Directed Double-strand Breaks with the Ref Protein: A Novel RecA Dependent Nuclease from Bacteriophage P1. J Biol Chem. 2011 286(10):8240-51.

Adam Yokom (Southworth Lab)

  1. Murai MJ, Pollock J, He S, Miao H, Purohit T, Yokom A, Hess JL, Muntean AG, Grembecka J, Cierpicki T, The same site on LEDGF IBD domain represents therapeutic target for MLL leukemia and HIV. Blood, 2014 Oct 10.

  2. Yokom AL, Morishima Y, Lau M, Su M, Glukhova A, Osawa Y, Southworth DR, Architecture of the Nitric Oxide Synthase Holoenzyme Reveals Large Conformational Changes and a Calmodulin-Driven Release of the FMN Domain. J Biol Chem. 2014 April 15. [Full Text]